Published in: J. Mol. Biol., vol. 333, no. 5, pp. 907-916 (Nov. 7, 2003).
doi:10.1016/j.jmb.2003.09.015
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-49V16CM-5&_user=10&_handle=W-WA-A-A-AY-MsSAYVA-UUW-AUZDZUVVBY-ZEEZYEEU-AY-U&_fmt=summary&_coverDate=11%2F07%2F2003&_rdoc=3&_orig=browse&_srch=%23toc%236899%232003%23996669994%23466544!&_cdi=6899&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=7f9bf910a3c2bd001f3f6f6403ac1005

"Phase Diagram of Nucleosome Core Particles".

S. Mangenot 1, A. Leforestier1 , D. Durand and F. Livolant 1, @

1 Laboratoire de Physique des Solides, CNRS UMR 8502, Bât 510, Université Paris-Sud, 91405, Orsay Cedex, France
2 LURE, Université Paris-Sud, Bat. 209D, BP34, 91898, Orsay Cedex, France

@ E-mail: livolant@lps.u-psud.fr



Abstract:

We present a phase diagram of the nucleosome core particle (NCP) as a function of the monovalent salt concentration and applied osmotic pressure. Above a critical pressure, NCPs stack on top of each other to form columns that further organize into multiple columnar phases. An isotropic (and in some cases a nematic) phase of columns is observed in the moderate pressure range. Under higher pressure conditions, a lamello-columnar phase and an inverse hexagonal phase form under low salt conditions, whereas a 2D hexagonal phase or a 3D orthorhombic phase is found at higher salt concentration. For intermediate salt concentrations, microphase separation occurs. The richness of the phase diagram originates from the heterogeneous distribution of charges at the surface of the NCP, which makes the particles extremely sensitive to small ionic variations of their environment, with consequences on their interactions and supramolecular organization. We discuss how the
polymorphism of NCP supramolecular organization may be involved in chromatin changes in the cellular context. 



Additional References:

1. Boeger H, Griesenbeck J, Strattan JS, and Kornberg RD, "Nucleosomes Unfold Completely at a Transcriptionally Active Promoter", Molecular Cell, vol 11, no. 6, pp. 1587-1598  (June, 2003).

2. Hovsepian JA, and Frenster JH, "RNA-Induced Melting of DNA during Selective Gene Transcription", Molec. Biol. Cell, vol. 13, supp. p. 239a (November, 2002).

3. Saha S, Ansari AZ, Jarell KA, and Ptashne M, "RNA Sequences that Work as Transcriptional Activating Regions", Nucleic Acid Research, vol. 31, no. 5, pp. 1565-1570 (March 1, 2003).

4. Buskirk AR, Kehayova PD, Landrigan A, and Liu DR, "In Vivo Evolution of an RNA-Based Transcriptional Activator", Chemistry and Biology, vol 10, no. 6, pp. 533-540 (June, 2003).

5. Lanz RB, Chua SS, Barron N, Söder BM, DeMayo F, and O'Malley BW, "Steroid Receptor RNA Activator Stimulates Proliferation as Well as Apoptosis In Vivo", Molecular and Cellular Biology, vol. 23, no. 20, pp. 7163-7176 (October, 2003).

6. Frenster JH, "Ultrastructural Probes of Active DNA Sites, and the RNA Activators of DNA",  Reviews and Slide Presentation.


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euchromatin: "the most active portion of the genome within the cell nucleus".